A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.

2.50
Hdl Handle:
http://hdl.handle.net/10029/620969
Title:
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.
Authors:
Emond-Rheault, Jean-Guillaume; Jeukens, Julie; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Dupont, Marie-Josée; Colavecchio, Anna; Barrere, Virginie; Cadieux, Brigitte; Arya, Gitanjali; Bekal, Sadjia; Berry, Chrystal; Burnett, Elton; Cavestri, Camille; Chapin, Travis K; Crouse, Alanna; Daigle, France; Danyluk, Michelle D; Delaquis, Pascal; Dewar, Ken; Doualla-Bell, Florence; Fliss, Ismail; Fong, Karen; Fournier, Eric; Franz, Eelco; Garduno, Rafael; Gill, Alexander; Gruenheid, Samantha; Harris, Linda; Huang, Carol B; Huang, Hongsheng; Johnson, Roger; Joly, Yann; Kerhoas, Maud; Kong, Nguyet; Lapointe, Gisèle; Larivière, Line; Loignon, Stéphanie; Malo, Danielle; Moineau, Sylvain; Mottawea, Walid; Mukhopadhyay, Kakali; Nadon, Céline; Nash, John; Ngueng Feze, Ida; Ogunremi, Dele; Perets, Ann; Pilar, Ana V; Reimer, Aleisha R; Robertson, James; Rohde, John; Sanderson, Kenneth E; Song, Lingqiao; Stephan, Roger; Tamber, Sandeep; Thomassin, Paul; Tremblay, Denise; Usongo, Valentine; Vincent, Caroline; Wang, Siyun; Weadge, Joel T; Wiedmann, Martin; Wijnands, Lucas; Wilson, Emily D; Wittum, Thomas; Yoshida, Catherine; Youfsi, Khadija; Zhu, Lei; Weimer, Bart C; Goodridge, Lawrence; Levesque, Roger C
Abstract:
The Salmonella Syst-OMICS consortium is sequencing 4,500 Salmonella genomes and building an analysis pipeline for the study of Salmonella genome evolution, antibiotic resistance and virulence genes. Metadata, including phenotypic as well as genomic data, for isolates of the collection are provided through the Salmonella Foodborne Syst-OMICS database (SalFoS), at https://salfos.ibis.ulaval.ca/. Here, we present our strategy and the analysis of the first 3,377 genomes. Our data will be used to draw potential links between strains found in fresh produce, humans, animals and the environment. The ultimate goals are to understand how Salmonella evolves over time, improve the accuracy of diagnostic methods, develop control methods in the field, and identify prognostic markers for evidence-based decisions in epidemiology and surveillance.
Citation:
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. 2017, 8:996 Front Microbiol
Journal:
Front Microbiol 2017, 8:996
Issue Date:
2017
URI:
http://hdl.handle.net/10029/620969
DOI:
10.3389/fmicb.2017.00996
PubMed ID:
28626454
Type:
Article
Language:
en
ISSN:
1664-302X
Appears in Collections:
Miscellaneous

Full metadata record

DC FieldValue Language
dc.contributor.authorEmond-Rheault, Jean-Guillaumeen
dc.contributor.authorJeukens, Julieen
dc.contributor.authorFreschi, Lucaen
dc.contributor.authorKukavica-Ibrulj, Irenaen
dc.contributor.authorBoyle, Brianen
dc.contributor.authorDupont, Marie-Joséeen
dc.contributor.authorColavecchio, Annaen
dc.contributor.authorBarrere, Virginieen
dc.contributor.authorCadieux, Brigitteen
dc.contributor.authorArya, Gitanjalien
dc.contributor.authorBekal, Sadjiaen
dc.contributor.authorBerry, Chrystalen
dc.contributor.authorBurnett, Eltonen
dc.contributor.authorCavestri, Camilleen
dc.contributor.authorChapin, Travis Ken
dc.contributor.authorCrouse, Alannaen
dc.contributor.authorDaigle, Franceen
dc.contributor.authorDanyluk, Michelle Den
dc.contributor.authorDelaquis, Pascalen
dc.contributor.authorDewar, Kenen
dc.contributor.authorDoualla-Bell, Florenceen
dc.contributor.authorFliss, Ismailen
dc.contributor.authorFong, Karenen
dc.contributor.authorFournier, Ericen
dc.contributor.authorFranz, Eelcoen
dc.contributor.authorGarduno, Rafaelen
dc.contributor.authorGill, Alexanderen
dc.contributor.authorGruenheid, Samanthaen
dc.contributor.authorHarris, Lindaen
dc.contributor.authorHuang, Carol Ben
dc.contributor.authorHuang, Hongshengen
dc.contributor.authorJohnson, Rogeren
dc.contributor.authorJoly, Yannen
dc.contributor.authorKerhoas, Mauden
dc.contributor.authorKong, Nguyeten
dc.contributor.authorLapointe, Gisèleen
dc.contributor.authorLarivière, Lineen
dc.contributor.authorLoignon, Stéphanieen
dc.contributor.authorMalo, Danielleen
dc.contributor.authorMoineau, Sylvainen
dc.contributor.authorMottawea, Waliden
dc.contributor.authorMukhopadhyay, Kakalien
dc.contributor.authorNadon, Célineen
dc.contributor.authorNash, Johnen
dc.contributor.authorNgueng Feze, Idaen
dc.contributor.authorOgunremi, Deleen
dc.contributor.authorPerets, Annen
dc.contributor.authorPilar, Ana Ven
dc.contributor.authorReimer, Aleisha Ren
dc.contributor.authorRobertson, Jamesen
dc.contributor.authorRohde, Johnen
dc.contributor.authorSanderson, Kenneth Een
dc.contributor.authorSong, Lingqiaoen
dc.contributor.authorStephan, Rogeren
dc.contributor.authorTamber, Sandeepen
dc.contributor.authorThomassin, Paulen
dc.contributor.authorTremblay, Deniseen
dc.contributor.authorUsongo, Valentineen
dc.contributor.authorVincent, Carolineen
dc.contributor.authorWang, Siyunen
dc.contributor.authorWeadge, Joel Ten
dc.contributor.authorWiedmann, Martinen
dc.contributor.authorWijnands, Lucasen
dc.contributor.authorWilson, Emily Den
dc.contributor.authorWittum, Thomasen
dc.contributor.authorYoshida, Catherineen
dc.contributor.authorYoufsi, Khadijaen
dc.contributor.authorZhu, Leien
dc.contributor.authorWeimer, Bart Cen
dc.contributor.authorGoodridge, Lawrenceen
dc.contributor.authorLevesque, Roger Cen
dc.date.accessioned2018-01-02T14:15:55Z-
dc.date.available2018-01-02T14:15:55Z-
dc.date.issued2017-
dc.identifier.citationA Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. 2017, 8:996 Front Microbiolen
dc.identifier.issn1664-302X-
dc.identifier.pmid28626454-
dc.identifier.doi10.3389/fmicb.2017.00996-
dc.identifier.urihttp://hdl.handle.net/10029/620969-
dc.description.abstractThe Salmonella Syst-OMICS consortium is sequencing 4,500 Salmonella genomes and building an analysis pipeline for the study of Salmonella genome evolution, antibiotic resistance and virulence genes. Metadata, including phenotypic as well as genomic data, for isolates of the collection are provided through the Salmonella Foodborne Syst-OMICS database (SalFoS), at https://salfos.ibis.ulaval.ca/. Here, we present our strategy and the analysis of the first 3,377 genomes. Our data will be used to draw potential links between strains found in fresh produce, humans, animals and the environment. The ultimate goals are to understand how Salmonella evolves over time, improve the accuracy of diagnostic methods, develop control methods in the field, and identify prognostic markers for evidence-based decisions in epidemiology and surveillance.en
dc.language.isoenen
dc.rightsArchived with thanks to Frontiers in microbiologyen
dc.titleA Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.en
dc.typeArticleen
dc.identifier.journalFront Microbiol 2017, 8:996en

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