Articles and other publications by RIVM employees: Recent submissions
Now showing items 1-20 of 1948
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Intraspecific genetic variation in and populations circulating in different geographical regions of Poland.Trichinella spiralis and Trichinella britovi are species of nematodes which are responsible for the majority of Trichinella infections in the world and the most prevalent in Poland. The most abundant species - T. spiralis, is considered to be more genetically homogeneous in Europe than T. britovi. The aim of the present study was to determine the genetic variability in T. spiralis and T. britovi populations based on nuclear 5S rDNA intergenic spacer region (5S rDNA) and cytochrome c oxidase 1 (COX1) gene sequences. For the study, 55 isolates of T. spiralis and 50 isolates of T. britovi isolated from wild boars, pigs, brown rat and a red fox were analyzed. Based on the analysis of both genes, the genetic variability within populations of T. spiralis and T. britovi differed. In T. spiralis, two single nucleotide polymorphisms (SNPs) were observed in the 612 bp 5S rDNA gene fragment, and one SNP was detected in the 700 bp COX1 gene fragment. In T. britovi, 17 single nucleotide variations (SNVs) were detected in the 5S rDNA gene fragment (among them 16 SNPs), while COX1 sequence analysis revealed the occurrence of 20 SNVs between the sequences tested (among them 19 SNPs). For the majority of T. spiralis isolates the investigated larvae presented uniform haplotypes. In contrast, most of the isolates of T. britovi consisted of larvae of different haplotypes. Geographical analysis showed that each region exhibited different haplotype composition and richness. Warmińsko-Mazurskie and Zachodniopomorskie regions were the richest in haplotypes (15 and 16 haplotypes, respectively). We used heatmaps showing a characteristic pattern for each region graphically. This may allow to differentiate regions based on the occurrence of particular haplotypes. Furthermore, a PCA analysis on the SNP level yielded biplots that show that certain haplotypes/genotypes are associated with (clusters of) regions.
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Interaction of zero valent copper nanoparticles with algal cells under simulated natural conditions: Particle dissolution kinetics, uptake and heteroaggregation.Some metal-based engineered nanoparticles (ENPs) undergo fast dissolution and/or aggregation when they are released in the environment. The underlying processes are controlled by psychochemical/biological parameters of the environment and the properties of the particles. In this study, we investigated the interaction between algal cells and zero valent copper nanoparticles (Cu0-ENPs) to elucidate how the cells influence the dissolution and aggregation kinetics of the particles and how these kinetics influence the cellular uptake of Cu. Our finding showed that the concentration of dissolved Cu ([Cu]dissolved) in the supernatant of the culture media without algal cells was higher than the [Cu]dissolved in the media with algal cells. In the absence of the cells, dissolved organic matter (DOC) increased the dissolution of the particle due to increasing the stability of the particles against aggregation, thus increasing the available surface area. In the presence of algae, Cu0-ENPs heteroaggregated with the cells. Thus, the available surface area decreased over time and this resulted in a low dissolution rate of the particles. The DOC corona on the surface of the particles increased the heteroaggregation of the particles with the cells and decreases the uptake of the particles. Our findings showed that microorganisms influence the fate of ENPs in the environment, and they do so by modifying the dissolution and aggregation kinetics of the Cu0-ENPs.
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Trace amounts of fenofibrate acid sensitize the photodegradation of bezafibrate in effluents: Mechanisms, degradation pathways, and toxicity evaluation.Effluent organic matter (EfOM), which is composed of background natural organic matter (NOM), soluble microbial degradation products, and trace amounts of organic pollutants, can play an important role in the photodegradation of emerging pollutants in the effluent. In this study, the impact of organic pollutants, using fenofibrate acid (FNFA) as a representative, on the photodegradation of emerging contaminants, using bezafibrate (BZF) as a representative, in effluents was investigated. It is found that BZF undergo fast degradation in the presence of FNFA although BZF is recalcitrant to degradation under simulated sunlight irradiation. The promotional effect of FNFA is due to the generation of singlet oxygen (1O2) and hydrated electrons (e-aq). Based on the structures of the identified intermediates, 1O2 initiated oxidation and e-aq initiated reduction reactions were the main photodegradation pathways of BZF in the effluents. The toxicity of the main photodegradation intermediates for BZF and FNFA was higher than that of the parent compounds, and the acute toxicity increased during simulated sunlight irradiation. The results demonstrated that trace amounts of organic compounds in EfOM can play an important role in sensitizing the photodegradation of some emerging pollutants in the effluent.
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Prosthetic Valve Endocarditis with in a Human European Patient and its Detection in Red Squirrels ().Members of the genus Bartonella are fastidious Gram-negative facultative intracellular bacteria that are typically transmitted by arthropod vectors. Several Bartonella spp. have been found to cause culture-negative endocarditis in humans. Here, we report the case of a 75-year old German woman with prosthetic valve endocarditis due to Bartonella washoensis. The infecting agent was characterized by sequencing of six housekeeping genes (16S rRNA, ftsZ, gltA, groEL, ribC, rpoB) applying a multilocus sequence typing (MLST) approach. The 5097 bp of the concatenated housekeeping gene sequence from the patient were 99.0% identical to a B. washoensis strain from a red squirrel (Sciurus vulgaris orientis) from China. 39% (24/62) of red squirrel (S. vulgaris) samples from the Netherlands were positive for the B. washoensis gltA gene variant detected in the patient. This suggests that the red squirrel is the reservoir host for human infection in Europe.
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Antibody Testing in Estimating Past Exposure to C in the Netherlands Chlamydia Cohort Study.The asymptomatic course of Chlamydia trachomatis (CT) infections can result in underestimated CT lifetime prevalence. Antibody testing might improve this estimate. We assessed CT antibody positivity and predictive factors thereof in the Netherlands Chlamydia Cohort Study. Women who had ≥1 CT Nucleic Acid Amplification Test (NAAT) in the study (2008-2011) and who provided self-reported information on NAATs were tested for CT major outer membrane protein specific IgG in serum (2016). CT antibody positivity was assessed and predictive factors were identified using multivariable logistic regressions, separately for CT-positive women (≥1 positive NAAT or ≥1 self-reported positive CT test) and CT-negative women (negative by study NAAT and self-report). Of the 3,613 women studied, 833 (23.1%) were CT -positive. Among the CT-negative women, 208 (7.5%, 95%CI 6.5-8.5) tested positive for CT antibodies. This increased CT lifetime prevalence with 5.8% (95%CI 5.0-6.5). Among women with a CT-positive history, 338 (40.6%, 95%CI 38.5-44.1) tested positive. Predictive factors for antibody positivity related to lower social economic status, sexual risk behavior, multiple infections, higher body mass index, and non-smoking. CT antibody testing significantly increased the lifetime prevalence. Combining NAAT outcomes, self-reported positive tests, and antibody testing reduced misclassification in CT prevalence estimates.
