A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.

Emond-Rheault, Jean-Guillaume; Jeukens, Julie; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Dupont, Marie-Josée; Colavecchio, Anna; Barrere, Virginie; Cadieux, Brigitte; Arya, Gitanjali; Bekal, Sadjia; Berry, Chrystal; Burnett, Elton; Cavestri, Camille; Chapin, Travis K; Crouse, Alanna; Daigle, France; Danyluk, Michelle D; Delaquis, Pascal; Dewar, Ken; Doualla-Bell, Florence; Fliss, Ismail; Fong, Karen; Fournier, Eric; Franz, Eelco; Garduno, Rafael; Gill, Alexander; Gruenheid, Samantha; Harris, Linda; Huang, Carol B; Huang, Hongsheng; Johnson, Roger; Joly, Yann; Kerhoas, Maud; Kong, Nguyet; Lapointe, Gisèle; Larivière, Line; Loignon, Stéphanie; Malo, Danielle; Moineau, Sylvain; Mottawea, Walid; Mukhopadhyay, Kakali; Nadon, Céline; Nash, John; Ngueng Feze, Ida; Ogunremi, Dele; Perets, Ann; Pilar, Ana V; Reimer, Aleisha R; Robertson, James; Rohde, John; Sanderson, Kenneth E; Song, Lingqiao; Stephan, Roger; Tamber, Sandeep; Thomassin, Paul; Tremblay, Denise; Usongo, Valentine; Vincent, Caroline; Wang, Siyun; Weadge, Joel T; Wiedmann, Martin; Wijnands, Lucas; Wilson, Emily D; Wittum, Thomas; Yoshida, Catherine; Youfsi, Khadija; Zhu, Lei; Weimer, Bart C; Goodridge, Lawrence; Levesque, Roger C

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Authors

Emond-Rheault, Jean-Guillaume
Jeukens, Julie
Freschi, Luca
Kukavica-Ibrulj, Irena
Boyle, Brian
Dupont, Marie-Josée
Colavecchio, Anna
Barrere, Virginie
Cadieux, Brigitte
Arya, Gitanjali
Bekal, Sadjia
Berry, Chrystal
Burnett, Elton
Cavestri, Camille
Chapin, Travis K
Crouse, Alanna
Daigle, France
Danyluk, Michelle D
Delaquis, Pascal
Dewar, Ken
Doualla-Bell, Florence
Fliss, Ismail
Fong, Karen
Fournier, Eric
Franz, Eelco
Garduno, Rafael
Gill, Alexander
Gruenheid, Samantha
Harris, Linda
Huang, Carol B
Huang, Hongsheng
Johnson, Roger
Joly, Yann
Kerhoas, Maud
Kong, Nguyet
Lapointe, Gisèle
Larivière, Line
Loignon, Stéphanie
Malo, Danielle
Moineau, Sylvain
Mottawea, Walid
Mukhopadhyay, Kakali
Nadon, Céline
Nash, John
Ngueng Feze, Ida
Ogunremi, Dele
Perets, Ann
Pilar, Ana V
Reimer, Aleisha R
Robertson, James
Rohde, John
Sanderson, Kenneth E
Song, Lingqiao
Stephan, Roger
Tamber, Sandeep
Thomassin, Paul
Tremblay, Denise
Usongo, Valentine
Vincent, Caroline
Wang, Siyun
Weadge, Joel T
Wiedmann, Martin
Wijnands, Lucas
Wilson, Emily D
Wittum, Thomas
Yoshida, Catherine
Youfsi, Khadija
Zhu, Lei
Weimer, Bart C
Goodridge, Lawrence
Levesque, Roger C

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Article

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Title

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.

Published in

Front Microbiol 2017, 8:996

Publiekssamenvatting

The Salmonella Syst-OMICS consortium is sequencing 4,500 Salmonella genomes and building an analysis pipeline for the study of Salmonella genome evolution, antibiotic resistance and virulence genes. Metadata, including phenotypic as well as genomic data, for isolates of the collection are provided through the Salmonella Foodborne Syst-OMICS database (SalFoS), at https://salfos.ibis.ulaval.ca/. Here, we present our strategy and the analysis of the first 3,377 genomes. Our data will be used to draw potential links between strains found in fresh produce, humans, animals and the environment. The ultimate goals are to understand how Salmonella evolves over time, improve the accuracy of diagnostic methods, develop control methods in the field, and identify prognostic markers for evidence-based decisions in epidemiology and surveillance.